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MicroRNA expression changes following synthesis of three full-sib Populus triploid populations with different heterozygosities.

Identifieur interne : 001303 ( Main/Exploration ); précédent : 001302; suivant : 001304

MicroRNA expression changes following synthesis of three full-sib Populus triploid populations with different heterozygosities.

Auteurs : Yujing Suo [République populaire de Chine] ; Yu Min [République populaire de Chine] ; Chunbo Dong [République populaire de Chine] ; Yi Wang [République populaire de Chine] ; Shiping Cheng [République populaire de Chine] ; Xiangyang Kang [République populaire de Chine]

Source :

RBID : pubmed:28884266

Descripteurs français

English descriptors

Abstract

KEY MESSAGE

Through high-throughput sequencing, we compared the relative expression levels of miRNA in three full-sib Populus triploid populations with that in their parents and one diploid hybrid population. We found similar numbers of miRNAs differentially expressed between the parents and the four progeny hybrid populations. In addition, unbalanced parental expression level dominance of miRNAs were found in the three allotriploid and interspecific hybrid populations, which may reprogram gene expression networks and contribute to the growth of Populus hybrids. These results indicated that hybridization has a great impact on the miRNA expression variation in the newly synthesized Populus triploid and diploid hybrid populations. However, we also found no significant differences in miRNA expression among one diploid and three triploid hybrid populations, hinting that miRNA abundances do not increase with the genome content. No dosage effect of miRNA expression could lead to dosage-dependent negative effects on target genes and their downstream pathway in polyploids. We speculate that polyploids may gain advantages from the slight decrease in miRNA regulation, suggesting an important molecular mechanism of polyploid advantage. Hybridization with three types of induced 2n gametes transmitted different parental heterozygosities has been proven as an efficient method for Populus triploid production. Several researches have shown that miRNA could be non-additively expressed in allopolyploids. However, it is still unclear whether the non-additively expressed miRNAs result from the effect of hybridization or polyploidization, and whether a dose response to the additional genomic content exists for the expression of miRNA. Toward this end, through high-throughput sequencing, we compared the expression levels of miRNA in three full-sib Populus triploid populations with that in their parents and one interspecific hybrid population. We found similar numbers of miRNAs differentially expressed between the parents and the four progeny hybrid populations. Unbalanced parental expression level dominance of miRNAs were found in the three triploid and diploid hybrid populations, which may reprogram gene expression networks and affect the growth of Populus hybrids. These results indicated that hybridization has a great impact on the miRNA expression variation in the newly synthesized Populus triploid and diploid hybrid populations. However, we also found no significant differences in miRNA expression among the three triploid populations and the diploid hybrid population. No dosage effect of miRNA expression could lead to dosage-dependent negative effects on target genes and their downstream pathway in polyploids. We speculate that polyploids may gain advantages from the decrease in miRNA negative regulation, suggesting an important molecular mechanism of polyploid advantage.


DOI: 10.1007/s11103-017-0627-3
PubMed: 28884266


Affiliations:


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Le document en format XML

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<country xml:lang="fr">République populaire de Chine</country>
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<name sortKey="Dong, Chunbo" sort="Dong, Chunbo" uniqKey="Dong C" first="Chunbo" last="Dong">Chunbo Dong</name>
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<name sortKey="Wang, Yi" sort="Wang, Yi" uniqKey="Wang Y" first="Yi" last="Wang">Yi Wang</name>
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<nlm:affiliation>National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Technology, Beijing Forestry University, No. 35, Qinghua East Road, Beijing, 100083, People's Republic of China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Technology, Beijing Forestry University, No. 35, Qinghua East Road, Beijing, 100083</wicri:regionArea>
<wicri:noRegion>100083</wicri:noRegion>
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<nlm:affiliation>Key Laboratory of Genetics and Breeding in Forest Tree and Ornamental Plants, Ministry of Education, College of Biological Sciences and Technology, Beijing Forestry University, No. 35, Qinghua East Road, Beijing, 100083, People's Republic of China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Key Laboratory of Genetics and Breeding in Forest Tree and Ornamental Plants, Ministry of Education, College of Biological Sciences and Technology, Beijing Forestry University, No. 35, Qinghua East Road, Beijing, 100083</wicri:regionArea>
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<name sortKey="Cheng, Shiping" sort="Cheng, Shiping" uniqKey="Cheng S" first="Shiping" last="Cheng">Shiping Cheng</name>
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<nlm:affiliation>National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Technology, Beijing Forestry University, No. 35, Qinghua East Road, Beijing, 100083, People's Republic of China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Technology, Beijing Forestry University, No. 35, Qinghua East Road, Beijing, 100083</wicri:regionArea>
<wicri:noRegion>100083</wicri:noRegion>
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<country xml:lang="fr">République populaire de Chine</country>
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<name sortKey="Kang, Xiangyang" sort="Kang, Xiangyang" uniqKey="Kang X" first="Xiangyang" last="Kang">Xiangyang Kang</name>
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<series>
<title level="j">Plant molecular biology</title>
<idno type="eISSN">1573-5028</idno>
<imprint>
<date when="2017" type="published">2017</date>
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<keywords scheme="KwdEn" xml:lang="en">
<term>Crosses, Genetic (MeSH)</term>
<term>Diploidy (MeSH)</term>
<term>Gene Expression Profiling (methods)</term>
<term>Gene Expression Regulation, Plant (MeSH)</term>
<term>Genetic Variation (MeSH)</term>
<term>Genetics, Population (MeSH)</term>
<term>Heterozygote (MeSH)</term>
<term>High-Throughput Nucleotide Sequencing (methods)</term>
<term>Hybridization, Genetic (MeSH)</term>
<term>MicroRNAs (genetics)</term>
<term>Polyploidy (MeSH)</term>
<term>Populus (genetics)</term>
<term>RNA, Plant (genetics)</term>
<term>Reverse Transcriptase Polymerase Chain Reaction (MeSH)</term>
<term>Triploidy (MeSH)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr">
<term>ARN des plantes (génétique)</term>
<term>Analyse de profil d'expression de gènes (méthodes)</term>
<term>Croisements génétiques (MeSH)</term>
<term>Diploïdie (MeSH)</term>
<term>Génétique des populations (MeSH)</term>
<term>Hybridation génétique (MeSH)</term>
<term>Hétérozygote (MeSH)</term>
<term>Polyploïdie (MeSH)</term>
<term>Populus (génétique)</term>
<term>RT-PCR (MeSH)</term>
<term>Régulation de l'expression des gènes végétaux (MeSH)</term>
<term>Séquençage nucléotidique à haut débit (méthodes)</term>
<term>Triploïdie (MeSH)</term>
<term>Variation génétique (MeSH)</term>
<term>microARN (génétique)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en">
<term>MicroRNAs</term>
<term>RNA, Plant</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en">
<term>Populus</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr">
<term>ARN des plantes</term>
<term>Populus</term>
<term>microARN</term>
</keywords>
<keywords scheme="MESH" qualifier="methods" xml:lang="en">
<term>Gene Expression Profiling</term>
<term>High-Throughput Nucleotide Sequencing</term>
</keywords>
<keywords scheme="MESH" qualifier="méthodes" xml:lang="fr">
<term>Analyse de profil d'expression de gènes</term>
<term>Séquençage nucléotidique à haut débit</term>
</keywords>
<keywords scheme="MESH" xml:lang="en">
<term>Crosses, Genetic</term>
<term>Diploidy</term>
<term>Gene Expression Regulation, Plant</term>
<term>Genetic Variation</term>
<term>Genetics, Population</term>
<term>Heterozygote</term>
<term>Hybridization, Genetic</term>
<term>Polyploidy</term>
<term>Reverse Transcriptase Polymerase Chain Reaction</term>
<term>Triploidy</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr">
<term>Croisements génétiques</term>
<term>Diploïdie</term>
<term>Génétique des populations</term>
<term>Hybridation génétique</term>
<term>Hétérozygote</term>
<term>Polyploïdie</term>
<term>RT-PCR</term>
<term>Régulation de l'expression des gènes végétaux</term>
<term>Triploïdie</term>
<term>Variation génétique</term>
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<p>
<b>KEY MESSAGE</b>
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<p>Through high-throughput sequencing, we compared the relative expression levels of miRNA in three full-sib Populus triploid populations with that in their parents and one diploid hybrid population. We found similar numbers of miRNAs differentially expressed between the parents and the four progeny hybrid populations. In addition, unbalanced parental expression level dominance of miRNAs were found in the three allotriploid and interspecific hybrid populations, which may reprogram gene expression networks and contribute to the growth of Populus hybrids. These results indicated that hybridization has a great impact on the miRNA expression variation in the newly synthesized Populus triploid and diploid hybrid populations. However, we also found no significant differences in miRNA expression among one diploid and three triploid hybrid populations, hinting that miRNA abundances do not increase with the genome content. No dosage effect of miRNA expression could lead to dosage-dependent negative effects on target genes and their downstream pathway in polyploids. We speculate that polyploids may gain advantages from the slight decrease in miRNA regulation, suggesting an important molecular mechanism of polyploid advantage. Hybridization with three types of induced 2n gametes transmitted different parental heterozygosities has been proven as an efficient method for Populus triploid production. Several researches have shown that miRNA could be non-additively expressed in allopolyploids. However, it is still unclear whether the non-additively expressed miRNAs result from the effect of hybridization or polyploidization, and whether a dose response to the additional genomic content exists for the expression of miRNA. Toward this end, through high-throughput sequencing, we compared the expression levels of miRNA in three full-sib Populus triploid populations with that in their parents and one interspecific hybrid population. We found similar numbers of miRNAs differentially expressed between the parents and the four progeny hybrid populations. Unbalanced parental expression level dominance of miRNAs were found in the three triploid and diploid hybrid populations, which may reprogram gene expression networks and affect the growth of Populus hybrids. These results indicated that hybridization has a great impact on the miRNA expression variation in the newly synthesized Populus triploid and diploid hybrid populations. However, we also found no significant differences in miRNA expression among the three triploid populations and the diploid hybrid population. No dosage effect of miRNA expression could lead to dosage-dependent negative effects on target genes and their downstream pathway in polyploids. We speculate that polyploids may gain advantages from the decrease in miRNA negative regulation, suggesting an important molecular mechanism of polyploid advantage.</p>
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